Medical Data Privacy and Privacy-Preserving Machine Learning

We develop methods that let hospitals and research labs analyze clinical and genomic data together, with machine learning and statistics, without exposing the patients behind it. We are a research group at the University of Tübingen.

Read about our research Meet the team

Members of the MDPPML group standing together outside a university building

What we work on

All of it is privacy-preserving: institutions get joint results without handing over patient data.

More about our research

Genomics and rare diseases
Genome-wide association studies, variant queries and rare disease analysis across sites, without exposing patients' data.
Medical record linkage
Matching records of the same patient across sources to uncover new relationships between diseases.
Secure computation frameworks
CECILIA, our three-party MPC framework, plus secure training, data imputation and fast randomized-encoding methods for medical data.
Collaborative model evaluation
Letting clients evaluate models on pooled test data, such as computing AUC, without exposing that data to each other.
Hardware-based security
Authentication with physically unclonable functions, and privacy for smart grids with trusted execution environments.
Federated learning
Training models across institutions without pooling data, from domain adaptation to seizure prediction and rare-syndrome diagnosis.
Explainable machine learning
Model explanations that stay useful without leaking the training data behind them.
Secure and trustworthy AI
How machine learning models can be attacked and defended, and what makes AI systems, including agentic ones, trustworthy.

Recent papers

  1. Privacy-Preserving Detection of Rare Disease-Associated Cell Subsets via Secure Multi-Party Computation

    arXiv preprint 2026 ŞS Mağara, E Havemann, D Jutz, AB Ünal, M Akgün

  2. Empirical Evidence for Simply Connected Decision Regions in Image Classifiers

    arXiv preprint 2026 A Swaminathan, M Akgün

  3. Unsupervised Multi-Source Federated Domain Adaptation under Domain Diversity through Group-Wise Discrepancy Minimization

    ICML 2026 L Reichart, CA Baykara, AB Ünal, H Lee, M Akgün

  4. Position: Trustworthy Model Context Protocol Enables Responsible Agentic AI!

    ICML 2026 A Swaminathan, A Hannemann

All publications

News

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Join the group

We welcome strong PhD and postdoc applications, research visits and collaborations in privacy-preserving machine learning for medicine.

Ways to join us

Funding and partners

  • University of Tübingen
  • Federal Ministry of Education and Research (BMBF)
  • German Research Foundation (DFG)
  • DIFUTURE
  • Medical Informatics Initiative Germany